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Which Perennials You Should Clean Up This Fall

By: Garden Gate staff
Sometimes it’s best to wait until spring to clean up your garden. But not always. Learn which perennials you should clean up in fall.

Dead peony foliage in fall: Dead peony foliage in fall can be unsightly and also harbor disease if left through winter.

Fall cleanup benefits

In cold climates, leaving foliage standing through winter can help protect their crowns. But some perennials really should be cleaned up in fall. Here are three reasons that your perennials might benefit from being cut back in fall. We’ll tell you why it’s a good idea to get rid of old growth, which plants this advice applies to and the best way trim them back.

Cleaning up dead peony foliage in fall: Keep disease away by removing infected perennial foliage in fall like this peony.

1. Prevent disease

Some plants harbor pests and disease in their dead foliage over winter. Cut back peonies, like you see above, to keep fungal diseases, such as peony leaf blotch and powdery mildew, from spreading. Gather a handful of stems and cut them off 2 to 3 in. above the soil.

Composting tip

Never compost suspicious-looking or infected leaves, stems or flowers. That could actually spread the problem, just send them away in the trash instead.

Discarding of infected peony foliage: Discarding peonies infected with powdery mildew in the trash will help the disease from spreading to the garden or compost pile.

Perennials to clean up in fall to prevent disease or insect problems

  • Bearded iris (Iris hybrids)
  • Bee balm (Monarda didyma)
  • Blackberry lily (Iris domestica)
  • Garden phlox (Phlox paniculata)
  • Peony (Paeonia lactiflora)

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coneflower seedhead clean up in fall: Prevent coneflowers from taking over in unwanted areas by cutting off spent blooms.

2. Clean up perennials to control reseeding

You can leave plants with seedheads standing for winter interest or to feed the birds. But if you don’t want plants like purple coneflowers to reseed and take over the area, cut them back in fall. Snip spent flowers back just below the mound of foliage for a tidy look.

Perennials to cut back in fall to control reseeding

  • Black-eyed Susan (Rudbeckia fulgida)
  • Blanket flower (Gaillardia x grandiflora)
  • Purple coneflower (Echinacea purpurea)
  • Globe thistle (Echinops ritro)
  • Jupiter's beard (Centranthus ruber)
  • Solomon's seal (Polygonatum spp.)
  • Turtlehead (Chelone spp.)

Dead hosta leaves in fall: Avoid smothering spring growth by removing large hosta leaves in fall.

3. Clean up perennials in fall to make room for spring growth

Cutting back some perennials’ fading foliage in fall helps spring-blooming bulbs and perennials. For example, hosta leaves create a dense mat over the ground, which can deform or prevent new spring growth. Don’t cut the leaves all the way to the ground, though. Instead, leave about 2 to 3 in. of each stem standing to protect the crown during winter.

Perennials to clean up in fall

  • Brunnera Brunnera macrophylla
  • Hosta Hosta hybrids
  • Ligularia Ligularia dentata

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Published: Sept. 24, 2018
Updated: Nov. 10, 2025
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